GGD Commands

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To see and/or search for data packages available through GGD, see: Available data packages

Important

If you use GGD, please cite the Nature Communications GGD paper

The ggd command line interface (cli) has multiple tools for data access and local management. Below you can find a short description of each tool, as well as links to specific pages about each.

Tabs for each tool are also available on the left tab bar.

Command

Description

ggd search

Search for a ggd data package

ggd predict-path

Predict the file path of a data package that has not been installed yet (Good for workflows like Snakemake)

ggd install

Install ggd data package(s)

ggd uninstall

Uninstall a ggd data package(s)

ggd list

List the installed data packages (in a specific environment)

ggd get-files

get the files for an installed ggd package

ggd pkg-info

Show a specific ggd package’s info

ggd show-env

Show the ggd specific environment variables

ggd make-recipe

Create a ggd recipe from a bash script

ggd make-meta-recipe

Create a ggd meta-recipe from a single or group of script

ggd check-recipe

Check/test a ggd recipe

Command links: